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1

Growing and cultivating the forest genomics database, TreeGenes

Falk, Taylor, Herndon, Nic, Grau, Emily, Buehler, Sean, Richter, Peter, Zaman, Sumaira, Baker, Eliza M, Ramnath, Risharde, Ficklin, Stephen, Staton, Margaret, Feltus, Frank A, Jung, Sook, Main, Doreen

Journal:

Year:

2018

Language:

english

File:

PDF, 21.05 MB

english, 2018

2

Identifying Temporally Regulated Root Nodulation Biomarkers Using Time Series Gene Co-Expression Network Analysis

Poehlman, William L., Schnabel, Elise L., Chavan, Suchitra A., Frugoli, Julia A., Feltus, Frank Alex

Journal:

Frontiers in Plant Science

Year:

2019

Language:

english

File:

PDF, 2.27 MB

english, 2019

3

Corrigendum: A Larger Chocolate Chip—Development of a 15K Theobroma cacao L. SNP Array to Create High-Density Linkage Maps

Livingstone III, Donald, Stack, Conrad, Mustiga, Guiliana M., Rodezno, Dayana C., Suarez, Carmen, Amores, Freddy, Feltus, Frank A., Mockaitis, Keithanne, Cornejo, Omar E., Motamayor, Juan C.

Journal:

Frontiers in Plant Science

Year:

2018

Language:

english

File:

PDF, 133 KB

english, 2018

4

Quantitative models of hydrolysis conversion efficiency and biomass crystallinity index for plant breeding

Vandenbrink, Joshua P., Hilten, Roger N., Das, K.C., Paterson, Andrew H., Alex Feltus, Frank, Lübberstedt, T.

Journal:

Year:

2013

Language:

english

File:

PDF, 475 KB

english, 2013

5

Autism risk genes are evolutionarily ancient and maintain a unique feature landscape that echoes their function

Casanova, Emily L., Switala, Andrew E., Dandamudi, Srini, Hickman, Allison R., Vandenbrink, Joshua, Sharp, Julia L., Feltus, Frank Alex, Casanova, Manuel F.

Journal:

Autism Research

Year:

2019

Language:

english

File:

PDF, 700 KB

english, 2019

6

A Systems-Genetics Approach and Data Mining Tool to Assist in the Discovery of Genes Underlying Complex Traits in Oryza sativa

Ficklin, Stephen P., Feltus, Frank Alex, Zhang, Jinfa

Journal:

Year:

2013

Language:

english

File:

PDF, 3.86 MB

english, 2013

7

Fine Mapping and Candidate Gene Analysis of the Tiller Suppression Gene ts1 in Rice

Liu, Lei, Meng, Fen, He, Yonggang, Zhu, Menghao, Shen, Yanhao, Zhang, Zhihong, Feltus, Frank Alexander

Journal:

Year:

2017

Language:

english

File:

PDF, 1.48 MB

english, 2017

8

Widespread Genotype-Phenotype Correlations in Intellectual Disability

Casanova, Emily L., Gerstner, Zachary, Sharp, Julia L., Casanova, Manuel F., Feltus, Frank Alex

Journal:

Frontiers in Psychiatry

Year:

2018

Language:

english

File:

PDF, 2.47 MB

english, 2018

9

Sorting Five Human Tumor Types Reveals Specific Biomarkers and Background Classification Genes

Roche, Kimberly E., Weinstein, Marvin, Dunwoodie, Leland J., Poehlman, William L., Feltus, Frank A.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.95 MB

english, 2018

10

A genetically anchored physical framework forTheobroma cacaocv. Matina 1-6

Christopher A Saski, Frank A Feltus, Margaret E Staton, Barbara P Blackmon, Stephen P Ficklin, David N Kuhn, Raymond J Schnell, Howard Shapiro, Juan Carlos Motamayor

Journal:

Year:

2011

Language:

english

File:

PDF, 748 KB

english, 2011

11

Growing and cultivating the forest genomics database, TreeGenes

Falk, Taylor, Herndon, Nic, Grau, Emily, Buehler, Sean, Richter, Peter, Zaman, Sumaira, Baker, Eliza M, Ramnath, Risharde, Ficklin, Stephen, Staton, Margaret, Feltus, Frank A, Jung, Sook, Main, Doreen

Journal:

Year:

2019

File:

PDF, 252 KB

2019

12

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits

Christopher A Saski, Zhigang Li, Frank A Feltus, Hong Luo

Journal:

Year:

2011

Language:

english

File:

PDF, 1.28 MB

english, 2011

13

Transcriptome analysis of leaf tissue from Bermudagrass ( Cynodon dactylon ) using a normalised cDNA library

Kim, Changsoo, Jang, Cheol Seong, Kamps, Terry L., Robertson, Jon S., Feltus, Frank A., Paterson, Andrew H.

Journal:

Functional Plant Biology

Year:

2008

File:

PDF, 330 KB

2008

14

GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity

Flagel, Lex E., Blackman, Benjamin K., Fishman, Lila, Monnahan, Patrick J., Sweigart, Andrea, Kelly, John K., Feltus, Frank Alexander

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 5.03 MB

english, 2019

15

Comparative Genomics of Grasses Promises a Bountiful Harvest

Andrew H. Paterson, John E. Bowers, Frank A. Feltus, Haibao Tang, Lifeng Lin and Xiyin Wang

Journal:

PLANT PHYSIOLOGY

Year:

2009

Language:

english

File:

PDF, 1.35 MB

english, 2009

16

GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity

Flagel, Lex E., Blackman, Benjamin K., Fishman, Lila, Monnahan, Patrick J., Sweigart, Andrea, Kelly, John K., Feltus, Frank Alexander

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 5.03 MB

2019

17

Bioenergy grass feedstock: current options and prospects for trait improvement using emerging genetic, genomic, and systems biology toolkits

Frank Alex Feltus, Joshua P Vandenbrink

Journal:

Biotechnology for Biofuels

Year:

2012

Language:

english

File:

PDF, 373 KB

english, 2012

18

Conserved Non-Coding Sequences are Associated with Rates of mRNA Decay in Arabidopsis

Spangler, Jacob B., Feltus, Frank Alex

Journal:

Frontiers in Plant Science

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

19

Inferring gene and protein interactions using PubMed citations and consensus Bayesian networks

Deeter, Anthony, Dalman, Mark, Haddad, Joseph, Duan, Zhong-Hui, Feltus, Frank Alexander

Journal:

Year:

2017

Language:

english

File:

PDF, 9.95 MB

english, 2017

20

Whole Genome Mapping with Feature Sets from High-Throughput Sequencing Data

Pan, Yonglong, Wang, Xiaoming, Liu, Lin, Wang, Hao, Luo, Meizhong, Feltus, Frank Alexander

Journal:

Year:

2016

Language:

english

File:

PDF, 3.97 MB

english, 2016

21

Diversity analysis and genome-wide association studies of grain shape and eating quality traits in rice (Oryza sativa L.) using DArT markers

Mogga, Maurice, Sibiya, Julia, Shimelis, Hussein, Lamo, Jimmy, Yao, Nasser, Feltus, Frank Alexander

Journal:

Year:

2018

Language:

english

File:

PDF, 7.45 MB

english, 2018

22

Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice

Bhandari, Aditi, Bartholomé, Jérôme, Cao-Hamadoun, Tuong-Vi, Kumari, Nilima, Frouin, Julien, Kumar, Arvind, Ahmadi, Nourollah, Feltus, Frank Alexander

Journal:

Year:

2019

File:

PDF, 1.73 MB

2019

23

A Larger Chocolate Chip—Development of a 15K Theobroma cacao L. SNP Array to Create High-Density Linkage Maps

Livingstone, Donald, Stack, Conrad, Mustiga, Guiliana M., Rodezno, Dayana C., Suarez, Carmen, Amores, Freddy, Feltus, Frank A., Mockaitis, Keithanne, Cornejo, Omar E., Motamayor, Juan C.

Journal:

Frontiers in Plant Science

Year:

2017

Language:

english

File:

PDF, 3.21 MB

english, 2017

24

RNAseq Analysis of the Response of Arabidopsis thaliana to Fractional Gravity Under Blue-Light Stimulation During Spaceflight

Herranz, Raúl, Vandenbrink, Joshua P., Villacampa, Alicia, Manzano, Aránzazu, Poehlman, William L., Feltus, Frank Alex, Kiss, John Z., Medina, Francisco Javier

Journal:

Frontiers in Plant Science

Year:

2019

Language:

english

File:

PDF, 3.04 MB

english, 2019

25

Experimental validation of inter-subspecific genetic diversity in rice represented by the differences between the DNA sequences of ‘Nipponbare’ and ‘93-11’

HanWei Mei, FangJun Feng, BaoRong Lu, WeiWei Wen, Andrew H. Paterson, XingXing Cai, Liang Chen, Frank A. Feltus, XiaoYan Xu, JingHong Wu, XinQiao Yu, HongWei Chen, Ying Li, LiJun Luo

Journal:

Chinese Science Bulletin

Year:

2007

Language:

english

File:

PDF, 2.91 MB

english, 2007

26

Physiological basis for isoxadifen-ethyl induction of nicosulfuron detoxification in maize hybrids

Sun, Lanlan, Wu, Renhai, Su, Wangcang, Gao, Zenggui, Lu, Chuantao, Feltus, Frank Alexander

Journal:

Year:

2017

Language:

english

File:

PDF, 3.97 MB

english, 2017

27

Genetic insights into elephantgrass persistence for bioenergy purpose

Rocha, João Romero do Amaral Santos de Carvalho, Marçal, Tiago de Souza, Salvador, Felipe Vicentino, da Silva, Adriel Carlos, Machado, Juarez Campolina, Carneiro, Pedro Crescêncio Souza, Feltus, Frank

Journal:

Year:

2018

Language:

english

File:

PDF, 2.39 MB

english, 2018

28

Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon

Andrew H. Paterson, Brad A. Chapman, Jessica C. Kissinger, John E. Bowers, Frank A. Feltus, James C. Estill

Journal:

Trends in Genetics

Year:

2006

Language:

english

File:

PDF, 236 KB

english, 2006

29

The Widening Gulf between Genomics Data Generation and Consumption: A Practical Guide to Big Data Transfer Technology

Feltus, Frank A., Breen, Joseph R., Deng, Juan, Izard, Ryan S., Konger, Christopher A., Ligon, Walter B., Preuss, Don, Wang, Kuang-Ching

Journal:

Bioinformatics and Biology Insights

Year:

2015

Language:

english

File:

PDF, 1.12 MB

english, 2015

30

Estimating parametric phenotypes that determine anthesis date in Zea mays: Challenges in combining ecophysiological models with genetics

Lamsal, Abhishes, Welch, Stephen M., White, Jeffrey W., Thorp, Kelly R., Bello, Nora M., Feltus, Frank Alexander

Journal:

Year:

2018

Language:

english

File:

PDF, 9.64 MB

english, 2018

31

[IEEE 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Kansas City, MO (2017.11.13-2017.11.16)] 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - OSG-KINC: High-throughput gene co-expression network construction using the open science grid

Poehlman, William L., Rynge, Mats, Balamurugan, D., Mills, Nicholas, Feltus, Frank A.

Year:

2017

Language:

english

File:

PDF, 802 KB

english, 2017

32

OSG-GEM: Gene Expression Matrix Construction Using the Open Science Grid

Poehlman, William L., Rynge, Mats, Branton, Chris, Balamurugan, D., Feltus, Frank A.

Journal:

Bioinformatics and Biology Insights

Year:

2016

File:

PDF, 684 KB

2016

33

Sequencing of a QTL-rich region of theTheobroma cacaogenome using pooled BACs and the identification of trait specific candidate genes

Frank A Feltus, Christopher A Saski, Keithanne Mockaitis, Niina Haiminen, Laxmi Parida, Zachary Smith, James Ford, Margaret E Staton, Stephen P Ficklin, Barbara P Blackmon, Chun-Huai Cheng, Raymond J

Journal:

Year:

2011

Language:

english

File:

PDF, 572 KB

english, 2011

34

Identification of GCC-box and TCC-box motifs in the promoters of differentially expressed genes in rice (Oryza sativa L.): Experimental and computational approaches

Prajapati, Gopal Kumar, Pandey, Bharati, Mishra, Awdhesh Kumar, Baek, Kwang-Hyun, Pandey, Dev Mani, Feltus, Frank Alexander

Journal:

Year:

2019

Language:

english

File:

PDF, 3.06 MB

english, 2019

35

Identifying differentially expressed genes in cancer patients using a non-parameter Ising model

Xumeng Li, Frank A. Feltus, Xiaoqian Sun, James Z. Wang, Feng Luo

Journal:

Year:

2011

Language:

english

File:

PDF, 198 KB

english, 2011

36

Ancestry informative alleles captured with reduced representation library sequencing in Theobroma cacao

Osorio-Guarín, Jaime A., Quackenbush, Corey R., Cornejo, Omar E., Feltus, Frank Alexander

Journal:

Year:

2018

Language:

english

File:

PDF, 1.43 MB

english, 2018

37

Development of Transcriptomic Markers for Population Analysis Using Restriction Site Associated RNA Sequencing (RARseq)

Alabady, Magdy S., Rogers, Willie L., Malmberg, Russell L., Feltus, Frank Alexander

Journal:

Year:

2015

Language:

english

File:

PDF, 2.14 MB

english, 2015

38

Comprehensive RNA-Seq profiling of the lung transcriptome of Bashbay sheep in response to experimental Mycoplasma ovipneumoniae infection

Du, Zhihui, Sun, Yanming, Wang, Jixue, Liu, Haiyan, Yang, Yi, Zhao, Ning, Feltus, Frank Alexander

Journal:

Year:

2020

File:

PDF, 2.21 MB

2020

39

Transcriptomic Analysis and Meta-Analysis of Human Granulosa and Cumulus Cells

Burnik Papler, Tanja, Vrtacnik Bokal, Eda, Maver, Ales, Kopitar, Andreja Natasa, Lovrečić, Luca, Feltus, Frank Alexander

Journal:

Year:

2015

Language:

english

File:

PDF, 1.69 MB

english, 2015

40

Macro-Climatic Distribution Limits Show Both Niche Expansion and Niche Specialization among C4 Panicoids

Aagesen, Lone, Biganzoli, Fernando, Bena, Julia, Godoy-Bürki, Ana C., Reinheimer, Renata, Zuloaga, Fernando O., Feltus, Frank Alexander

Journal:

Year:

2016

Language:

english

File:

PDF, 932 KB

english, 2016

41

Combining Limited Multiple Environment Trials Data with Crop Modeling to Identify Widely Adaptable Rice Varieties

Li, Tao, Ali, Jauhar, Marcaida, Manuel, Angeles, Olivyn, Franje, Neil Johann, Revilleza, Jastin Edrian, Manalo, Emmali, Redoña, Edilberto, Xu, Jianlong, Li, Zhikang, Feltus, Frank Alexander

Journal:

Year:

2016

Language:

english

File:

PDF, 3.22 MB

english, 2016

42

Transcriptome analysis of leaf tissue from Bermudagrass ( Cynodon dactylon ) using a normalised cDNA library

Kim, Changsoo, Jang, Cheol Seong, Kamps, Terry L., Robertson, Jon S., Feltus, Frank A., Paterson, Andrew H.

Journal:

Functional Plant Biology

Year:

2008

Language:

english

File:

PDF, 330 KB

english, 2008

43

RNAseq Analysis of the Response of Arabidopsis thaliana to Fractional Gravity Under Blue-Light Stimulation During Spaceflight

Herranz, Raúl, Vandenbrink, Joshua P., Villacampa, Alicia, Manzano, Aránzazu, Poehlman, William L., Feltus, Frank Alex, Kiss, John Z., Medina, Francisco Javier

Journal:

Frontiers in Plant Science

Year:

2019

File:

PDF, 3.04 MB

2019

44

Analysis of Crystallinity Index and Hydrolysis Rates in the Bioenergy CropSorghum bicolor

Joshua P. Vandenbrink, Roger N. Hilten, K. C. Das, Andrew H. Paterson, Frank Alex Feltus

Journal:

BioEnergy Research

Year:

2012

Language:

english

File:

PDF, 1.92 MB

english, 2012

45

Big Data Smart Socket (BDSS): A System that Abstracts Data Transfer Habits from End Users

Watts, Nick A., Feltus, Frank A.

Journal:

Year:

2016

Language:

english

File:

PDF, 153 KB

english, 2016

46

A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set

Pucker, Boas, Holtgräwe, Daniela, Stadermann, Kai Bernd, Frey, Katharina, Huettel, Bruno, Reinhardt, Richard, Weisshaar, Bernd, Feltus, Frank Alexander

Journal:

Year:

2019

Language:

english

File:

PDF, 1.15 MB

english, 2019

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